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Publications

2023

  1. Brubaker L, Horsley H, Khasriya R, Wolfe AJ. Microbiologist in the Clinic: Coitally Related Symptoms with Negative Urine Cultures. Accepted by the International Journal of Urogynecology 
  2. Brubaker L, Horsley H, Khasriya R, Wolfe AJ. 2023. Microbiologist in the clinic: coitally related symptoms with negative urine cultures. Int Urogynecol J. 2023 Oct 14. doi: 10.1007/s00192-023-05662-7. Online ahead of print. PMID: 37837460
  3. Rac G, James C, Patel HD, Desai S, Caruso, VM, Fischer DS, Lentz PS, Ward CT, Mazzarella BC, Phillips KG, Doshi C, Bicocca VT, Levin TG, Wolfe AJ, Gupta GN. 2023. Urinary comprehensive genomic profiling predicts urothelial carcinoma recurrence and identifies responders to intravesical therapy. Accepted by Mol Onc September 13 DOI 10.1002/1878-0261.13530.
  4. Choi BI, Ene A, Du J, Johnson G, Putonti C, Schouw CH, Dargis R, Senneby E, Christensen JJ, Wolfe AJ. 2023. Taxonomic considerations on Aerococcus urinaewith proposal of subdivision into Aerococcus urinae, Aerococcus tenax nov., Aerococcus mictus sp. nov., and Aerococcus loyolae sp. Nov. International Journal of Systematic and Evolutionary Microbiology. Sep;73(9). doi: 10.1099/ijsem.0.006066.PMID: 37755156
  5. Brubaker L, Chai TC, Horsley H, Khasriya R, Moreland RB, Wolfe AJ. 2023. Tarnished gold—the “standard” urine culture: reassessing the characteristics of a criterion standard for detecting urinary microbes. Front. Urol., 11 July 2023
    Female Urology Volume 3 - 2023 https://doi.org/10.3389/fruro.2023.1206046
  6. Moreland RB, Choi BI, Geaman W, Gonzalez C, Hochstedler-Kramer BR, John J, Kaindl J, Kesav N, Lamichhane J, Lucio L, Saxena M, Sharma A, Tinawi L, Vanek ME, Putonti C, Brubaker L, Wolfe AJ. 2023. Beyond the usual suspects: emerging uropathogens in the microbiome age. Front. Urol., 26 July 2023 Sec. Female Urology Volume 3 - 2023 https://doi.org/10.3389/fruro.2023.1212590
  7. Dornbier RA, Doshi CP, Desai SC, Bajic P, Van Kuiken, M, Farooq AV, Bresler L, Turk TMT, Wolfe AJ, Baldea KG. 2023. Metabolic syndrome and the urinary microbiome of patients undergoing PCNL. Asian Journal of Urology
  8. Montelongo Hernandez C, Putonti C, Wolfe AJ. 2023. Urinary Plasmids Reduce Permissivity to Coliphage Infection. Microbiol Spectr. 2023 Jul 6:e0130923. doi: 10.1128/spectrum.01309-23. Online ahead of print.PMID: 37409956
  9. Ene A, Banerjee S, Wolfe AJ, Putonti C. 2023. Exploring the genotypic and phenotypic differences distinguishing Lactobacillus jenseniiand Lactobacillus mulieris. mSphere. 2023 Jun 27:e0056222. doi: 10.1128/msphere.00562-22. PMID: 37366621 
  10. Du J, Khemmani M, Halverson T, Ene A, Limeira R, Tinawi L, Hochstedler-Kramer BR, Noronha MF, Putonti C, Wolfe AJ. Cataloging the Phylogenetic Diversity of Human Bladder Bacterial Isolates. bioRxiv. 2023 May 23:2023.05.23.541916. doi: 10.1101/2023.05.23.541916. Preprint.PMID: 37292924 
  11. Cole EB, Khemmani M, Liu H, Halverson TM, Noronha MF, Forster CS, Wolfe AJ, Shaikh N.J. Urogenital urobiome of healthy children does not differ from that of children with bladder and bowel dysfunction. Pediatr Urol. 2023 Apr 13:S1477-5131(23)00137-7. doi: 10.1016/j.jpurol.2023.04.009. PMID: 37117081
  12. James C, Gomez K, Desai S, Patel HD, Rac G, Doshi CP, Dornbier R, Bajic P, Halverson T, Gupta GN, Quek ML, Gorbonos A, Flanigan R, Wolfe AJ. Impact of intravesical Bacillus Calmette-Guérin and chemotherapy on the bladder microbiome in patients with non-muscle invasive bladder cancer. Front Cell Infect Microbiol. 2023 Apr 5;13:1125809. doi: 10.3389/fcimb.2023.1125809. eCollection 2023.PMID: 37091677 
  13. Crum E, Merchant Z, Ene A, Miller-Ensminger T, Johnson G, Wolfe AJ, Putonti C. PLoS One. 2023 Coliphages of the human urinary microbiota. 18(4):e0283930. doi: 10.1371/journal.pone.0283930. PMID: 37053131 
  14. Prasad A, Ene A, Jablonska S, Du J,Wolfe AJ, Putonti C. 2023. Comparative Genomic Study of Streptococcus anginosus Reveals Distinct Group of Urinary Strains. 2023 Feb 7:e0068722. doi: 10.1128/msphere.00687-22. Online ahead of print. PMID: 36744899
  15. Wolfe AJ, Rademacher DJ, Mores CR, Evans RJ, Overholt T, Halverson T, Limeira R, Matthews C, Badlani G, Brubaker L, Walker SJ. 2023. Detection of Bacteria in Bladder Mucosa of Adult Females. J Urol. 2023 Jan 19:101097JU0000000000003189. doi: 10.1097/JU.0000000000003189. Online ahead of print. PMID:36657058

2022

  1. Johnson G, Bataclan S, So M, Banerjee S,Wolfe AJ, Putonti C. 2022. Plasmids of the urinary microbiota. Access Microbiol. 2022 Nov 30;4(11):acmi000429. doi: 10.1099/acmi.0.000429. eCollection 2022. PMID: 36644432 
  2. Halverson T, Mueller ER, Brubaker L, Wolfe AJ. 2022. Urobiome changes differ based on OAB treatment in adult females. Int Urogynecol J. 2022 Nov 24. doi: 10.1007/s00192-022-05416-x. Online ahead of print. PMID: 36422657
  3. Liu F, Du J, Zhai Q, Hu J, Miller AW, Ren T, Feng Y, Jiang P, Hu L, Sheng J, Gu C, Yan R, Lv L, Wolfe AJ, Feng N. 2022. The Bladder Microbiome, Metabolome, Cytokines, and Phenotypes in Patients with Systemic Lupus Erythematosus. Microbiol Spectr. 2022 Aug 1:e0021222. doi: 10.1128/spectrum.00212-22. Online ahead of print. PMID: 35913213
  4. Joyce C, Halverson T, Gonzalez C, Brubaker L, Wolfe AJ. 2022. The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis. Front Cell Infect Microbiol. 2022 Jun 9;12:860408. doi: 10.3389/fcimb.2022.860408. eCollection 2022.PMID: 35755842 
  5. Montelongo C, Mores CR, Putonti C, Wolfe AJ, Abouelfetouh A. 2022. Whole-Genome Sequencing of Staphylococcus aureusand Staphylococcus haemolyticus Clinical Isolates from Egypt. Microbiol Spectr. 2022 Jun 21:e0241321. doi: 10.1128/spectrum.02413-21. Online ahead of print.PMID: 3572703
  6. Montelongo Hernandez C, Putonti C, Wolfe AJ. Profiling the plasmid conjugation potential of urinary Escherichia coli. Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000814.PMID: 35536743
  7. Halverson T, Mueller ER, Brubaker L,Wolfe AJ. Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women. Int Urogynecol J. 2022 Apr 12. doi: 10.1007/s00192-022-05190-w. Online ahead of print. PMID: 35412069
  8. Storm DW, Copp HL, Halverson TM, Du J, Juhr D, Wolfe AJ. 2022. A Child's urine is not sterile: A pilot study evaluating the Pediatric Urinary Microbiome. J Pediatr Urol. 2022 Mar 4:S1477-5131(22)00092-4. doi: 10.1016/j.jpurol.2022.02.025. Online ahead of print.PMID: 35337731

2021

  1. Brubaker L, Gourdine J-PF, Siddiqui NY, Holland A, Halverson T, Limeria R, Pride D, Ackerman L, Forster CS, Jacobs KM, Thomas-White KJ, Putonti C, Dong Q, Weinstein M, Lukacz ES, Karstens L, Wolfe AJ. 2021. Forming consensus to advance urobiome research. mSystems 6:e01371-20. https://doi.org/10.1128/mSystems.01371-20.
  2. Kachroo N, Lange D, Penniston KL, Stern J, Tasian G, Bajic P,Wolfe AJ, Suryavanshi M, Ticinesi A, Meschi T, Monga M, Miller AW. 2021. Standardization of microbiome studies for urolithiasis: an international consensus agreement. Nat Rev Urol. 2021 Mar 29. doi: 10.1038/s41585-021-00450-8. PMID: 33782583
  3. Brubaker L, Putonti C, Dong Q, Wolfe AJ. 2021. The human urobiome. Mamm Genome. 2021 Mar 2. doi: 10.1007/s00335-021-09862-8. Online ahead of print. PMID: 33651197
  4. Bajic P, Wolfe AJ. 2021. The Microbiome of Male Infertility: Paving the Road Ahead. Eur Urol. 16:S0302-2838(21)00093-2. doi:10.1016/j.eururo.2021.02.009 PMID: 33608155
  5. Montelongo Hernandez, C, Putonti C, Wolfe AJ. 2021. Characterizing plasmids in bacteria species relevant to urinary health. Microbiology Spectrum 2Dec 22;9(3):e0094221. doi: 10.1128/spectrum.00942-21. Epub 2021 Dec 22. PMID: 34937183
  6. Hoffman C, Siddiqui NY, Fields I, Gregory WT, Simon HM, Mooney MA, Wolfe AJ, Karstens L. mSystems. 2021, Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing. Sep 14:e0051821. doi: 10.1128/mSystems.00518-21. Online ahead of print.PMID: 34519534 
  7. Gilbert NM, Choi B, Du J, Collins C, Lewis AL, Putonti C, Wolfe AJ. 2021. A mouse model displays host and bacterial strain differences in Aerococcus urinae urinary tract infection. Biol Open. 2021 Aug 15;10(8):bio058931. doi: 10.1242/bio.058931. Epub 2021 Aug 13. PMID: 3438731
  8. Kachroo N, Lange D, Penniston KL, Stern J, Tasian G, Bajic P, Wolfe AJ, Suryavanshi M, Ticinesi A, Meschi T, Monga M, Miller AW. 2021. Meta-analysis of Clinical Microbiome Studies in Urolithiasis Reveal Age, Stone Composition, and Study Location as the Predominant Factors in Urolithiasis-Associated Microbiome Composition. mBio. 2021 Aug 10:e0200721. doi: 10.1128/mBio.02007-21. Online ahead of print. PMID: 34372696
  9. Abdul-Rahim O, Wu Q, Price TK, Pistone G, Diebel K, Bugni TS, Wolfe AJ. 2021. Phenyl-lactic acid is an active ingredient in bactericidal supernatants of Lactobacillus crispatus. J Bacteriol. 2021 Jul 19:JB0036021. doi: 10.1128/JB.00360-21. Online ahead of print. PMID: 34280003
  10. Barnes HC, Wolff B, Abdul-Rahim O, Harrington A, Hilt EE, Price TK, Halverson T, Hochstedler BR, Pham T, Acevedo-Alvarez M, Joyce C, Fitzgerald CM, Schreckenberger PC, Brubaker L,Wolfe AJ, Mueller ER. 2021. A Randomized Clinical Trial of Standard Versus Expanded Cultures to Diagnose Urinary Tract Infections in Women. .J Urol. 2021 Jun 29:101097JU0000000000001949. doi: 10.1097/JU.0000000000001949. Online ahead of print. PMID: 34184930
  11. Mores CR, Montelongo C, Putonti C,Wolfe AJ, Abouelfetouh A. 2021. Investigation of Plasmids Among Clinical Staphylococcus aureusand Staphylococcus haemolyticus Isolates From Egypt. Front Microbiol. Jun 4;12:659116. doi: 10.3389/fmicb.2021.659116. eCollection 2021.PMID: 34149648. 
  12. Mormando R,Wolfe AJ, Putonti C. 2021. Discriminating between JCPyV and BKPyV in Urinary Virome Data Sets. . May 31;13(6):1041. doi: 10.3390/v13061041.PMID: 34072839 
  13. Zandbergen LE, Halverson T, Brons JK, Wolfe AJ, de Vos MG. 2021. The Good and the Bad: Ecological Interaction Measurements Between the Urinary Microbiota and Uropathogens. Front Microbiol. May 10;12:659450. doi: 10.3389/fmicb.2021.659450. eCollection 2021.PMID: 34040594.
  14. Burnett LA, Hochstedler BR, Weldon K, Wolfe AJ, Brubaker L. 2021. Recurrent urinary tract infection: Association of clinical profiles with urobiome composition in women. .Neurourol Urodyn. 2021 May 26. doi: 10.1002/nau.24707. Online ahead of print.PMID: 34036621
  15. Putonti C, Thomas-White K, Crum E, Hilt EE, Price TK, Wolfe AJ. 2021. Genome Investigation of Urinary Gardnerella Strains and Their Relationship to Isolates of the Vaginal Microbiota. .mSphere. May 12;6(3):e00154-21. doi: 10.1128/mSphere.00154-21.PMID: 33980674 
  16. Hochstedler BR, Burnett L, Price TK, Jung C,Wolfe AJ, Brubaker L. 2021. Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods. Int Urogynecol J. 2021 Apr 14. doi: 10.1007/s00192-021-04780-4. Online ahead of print PMID: 33852041.
  17. Ene A, Miller-Ensminger T, Mores CR, Giannattasio-Ferraz S,Wolfe AJ, Abouelfetouh A, Putonti C. 2021. Examination of Staphylococcus aureusProphages Circulating in Egypt. Viruses. 2021 Feb 22;13(2):337. doi: 10.3390/v13020337. PMID: 33671574 
  18. Mores CR, Price TK, Wolff B, Halverson T, Limeira R, Brubaker L, Mueller ER, Putonti C, Wolfe AJ. 2021. Genomic relatedness and clinical significance of Streptococcus mitis strains isolated from the urogenital tract of sexual partners. Microb Genom. 2021 Feb 25. doi: 10.1099/mgen.0.000535. Epub 2021 Feb 25. PMID: 33629947 

2020

  1. Brassil B, Mores CR, Wolfe AJ, Putonti C. 2020. Characterization and Isolation of Temperate Streptococcus anginosus phages from the Urinary Tract. Journal of General Virology. Apr 21. doi: 10.1099/jgv.0.001407. [Epub ahead of print] PMID:32310742
  2. Hilt EE, Putonti C, Thomas-White K, Lewis AL, Visick KL, Gilbert NM, Wolfe AJ. Aerococcus urinae isolated from women with lower urinary tract symptoms: in vitro aggregation and genome analysis. J Bacteriol. 2020 Apr 13. pii: JB.00170-20. doi: 10.1128/JB.00170-20. [Epub ahead of print] PMID:32284319
  3. Jacobs KM, Price TK, Thomas-White K, Halverson T, Davies A, Myers DL, Wolfe AJ. Cultivable Bacteria in Urine of Women With Interstitial Cystitis: (Not) What We Expected. Female Pelvic Med Reconstr Surg. 2020 Apr 6. doi: 10.1097/SPV.0000000000000854. [Epub ahead of print] PMID:32265402
  4. Penckofer S, Limeira R, Joyce C, Grzesiak M, Thomas-White K, Wolfe AJ. Characteristics of the microbiota in the urine of women with type 2 diabetes. J Diabetes Complications. 2020 Mar 3:107561. doi: 10.1016/j.jdiacomp.2020.107561. [Epub ahead of print] PMID:32184058
  5. Chen YB, Hochstedler B, Pham TT, Acevedo Alvarez M, Mueller ER, Wolfe AJ. The Urethral Microbiota - A Missing Link in the Female Urinary Microbiota. J Urol. 2020 Mar 2:101097JU0000000000000910. doi: 10.1097/JU.0000000000000910. [Epub ahead of print] PMID:32118507
  6. Penckofer S, Limeira R, Joyce C, Grzesiak M, Thomas-White K, Wolfe A. Characteristics of the Microbiota in the Urine of Women with Type 2 Diabetes. Journal of Diabetes and Its Complications. In Press.
  7. Miller-Ensminger T, Mormando R, Maskeri L, Shapiro JW, Wolfe AJ, Putonti C. Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract. PLoS One. 2020 Jun 11;15(6):e0234159. doi: 10.1371/journal.pone.0234159. eCollection 2020.PMID: 32525961
  8. Price TK, Lin H, Gao X, Thomas-White KJ, Hilt EE, Mueller ER, Wolfe AJ, Dong Q, Brubaker L. Bladder Bacterial Diversity Differs In Continent and Incontinent Women: A Cross-Sectional Study. Am J Obstet Gynecol. 2020 May 4:S0002-9378(20)30512-3. doi: 10.1016/j.ajog.2020.04.033. Highlighted in Urotoday’s Beyond the Abstract
  9. Price TK, Wolff B, Halverson T, Limeira R, Brubaker L, Dong Q, Mueller ER, Wolfe AJ. Temporal Dynamics of the Adult Female Lower Urinary Tract Microbiota. mBio. 2020 Apr 21;11(2):e00475-20. doi: 10.1128/mBio.00475-20.PMID: 32317321 
  10. Price TK, Hilt EE, Thomas-White K, Mueller ER, Wolfe AJ, Brubaker L. The urobiome of continent adult women: a cross-sectional study. BJOG. 2020;127(2):193-201. doi:10.1111/1471-0528.15920
  11. Wolfe AJ, Brubaker L. 2020. ‘Ur-ine Old Age: Urinary Microbiome of Older Community Dwelling Women. Cell Host Microbe. 2020 Aug 12;28(2):149-151. doi: 10.1016/j.chom.2020.07.012.PMID: 32791105
  12. Garretto A, Miller-Ensminger T, Ene A, Merchant Z, Shah A, Gerodias A, Biancofiori A, Canchola S, Canchola S, Castillo E, Chowdhury T, Gandhi N, Hamilton S, Hatton K, Hyder S, Krull K, Lagios D, Lam T, Mitchell K, Mortensen C, Murphy A, Richburg J, Rokas M, Ryclik S, Sulit P, Szwajnos T, Widuch M, Willis J, Woloszyn M, Brassil B, Johnson J, Mormando R, Maskeri L, Batrich M, Stark N, Shapiro JW, Montelongo Hernandez C, Banerjee S, Wolfe AJ and Putonti C. 2020 Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms Frontiers in Microbiology 11:2094 doi: 10.3389/fmicb.2020.02094
  13. Putonti C, Shapiro JW, Ene A, Tsibere O, Wolfe AJ. 2020. Comparative genomic study of Lactobacillus jensenii and the newly defined Lactobacillus mulieris species identifies species-specific functionality. mSphere. 5(4):e00560-20. doi: 10.1128/mSphere.00560-20. PMID: 32817455
  14. Caterino JM, Stephens JA, Camargo Jr CA, Wexler R, Hebert C, Southerland LT, Hunold KM, Hains DS, Bischof JJ, Wei L, Wolfe AJ, Schwaderer A. 2020. Asymptomatic bacteriuria vs symptom underreporting in older Emergency Department patients with suspected urinary tract infection. JAGS. DOI: 10.1111/jgs.16775. In Press.
  15. Vollstedt A, Baunoch D, Wolfe A, Luke N, Wojno KJ, Cline K, Belkoff L, Milbank A, Sherman N, Haverkorn R, Gaines N, Yore L, Shore N, Opel M, Korman H, Kelly C, Jafri M, Campbell M, Keating P, Hazelton D, Makhlouf B, Wenzler B, Sabry M, Burks F, Penaranda M, Smith DE, Cacdac P, Sirls L. 2020. Bacterial Interactions as Detected by Pooled Antibiotic Susceptibility Testing (P-AST) in Polymicrobial Urine Specimens. Journal of Surgical Urology. J Sur urology: JSU-101. DOI: 10.29011/JSU-101.100001
  16. Miller-Ensminger T, Mormando R, Maskeri L, Shapiro JW, Wolfe AJ, Putonti C. Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract. PLoS One. 2020 Jun 11;15(6):e0234159. doi: 10.1371/journal.pone.0234159. eCollection 2020.PMID: 32525961
  17. Price TK, Lin H, Gao X, Thomas-White KJ, Hilt EE, Mueller ER, Wolfe AJ, Dong Q, Brubaker L. Bladder Bacterial Diversity Differs In Continent and Incontinent Women: A Cross-Sectional Study. Am J Obstet Gynecol. 2020 May 4:S0002-9378(20)30512-3. doi: 10.1016/j.ajog.2020.04.033. Highlighted in Urotoday’s Beyond the Abstract
  18. Price TK, Wolff B, Halverson T, Limeira R, Brubaker L, Dong Q, Mueller ER, Wolfe AJ. Temporal Dynamics of the Adult Female Lower Urinary Tract Microbiota. mBio. 2020 Apr 21;11(2):e00475-20. doi: 10.1128/mBio.00475-20.PMID: 32317321 

  19. Doshi CP, Montgomery J, Quek ML, Turk TMT, Wolfe AJ, Bajic P. 2019. "Sterile" Epididymal Abscess With Contralateral Intratesticular Recurrence. Urology. Nov 29. pii: S0090-4295(19)31046-5. doi: 10.1016/j.urology.2019.11.021. [Epub ahead of print] PMID:31790788

  20. Wolfe AJ, Brubaker L. 2020. ‘Ur-ine Old Age: Urinary Microbiome of Older Community Dwelling Women. Cell Host Microbe. 2020 Aug 12;28(2):149-151. doi: 10.1016/j.chom.2020.07.012.PMID: 32791105

2019

  1. Dornbier, R.A., Bajic, P., Van Kuiken, M., Jardaneh, A., Lin, H., Gao, X., Knudsen, B., Dong, Q., Wolfe, A.J., Schwaderer, A.L. 2019. The microbiome of calcium-based urinary stones. Urolithiasis. 2019 Jun 25. doi: 10.1007/s00240-019-01146-w. [Epub ahead of print] PMID: 31240349
  2. Karstens, L., Asquith, M., Davin, S., Fair, D., Gregory, W.T., Wolfe, A.J., Braun, J., McWeeney, S. 2019. Controlling for Contaminants in Low-Biomass 16S rRNA Gene Sequencing Experiments. mSystems. 2019 Jun 4;4(4). pii: e00290-19. doi: 10.1128/mSystems.00290-19. PMID:31164452
  3. Bajic, P., Dornbier, R.A., Doshi, C.P., Wolfe, A.J., Farooq, A.V., Bresler, L. 2019.  Implications of the Genitourinary Microbiota in Prostatic Disease. Curr Urol Rep. 2019. May 18;20(7):34. doi: 10.1007/s11934-019-0904-6. Review.PMID:31104156
  4. Garretto, A., Miller-Ensminger, T., Wolfe, A.J., Putonti, C. 2019. Bacteriophages of the lower urinary tract. Nat Rev Urol. 2019 May 9. doi: 10.1038/s41585-019-0192-4. [Epub ahead of print] Review. PMID: 31073244
  5. Bresler, L., Price, T.K., Hilt, E.E., Joyce, C., Fitzgerald, C.M., Wolfe, A.J. 2019. Female lower urinary tract microbiota do not associate with IC/PBS symptoms: a case-controlled study. Int Urogynecol J. 2019 Apr 16.  doi: 10.1007/s00192-019-03942-9. [Epub ahead of print] PMID: 30993388
  6. Shannon, M.B., Limeira, R., Johansen, D., Gao, X., Lin, H., Dong, Q., Wolfe, A.J., Mueller, E.R. 2019. Bladder urinary oxygen tension is correlated with urinary microbiota composition. Int Urogynecol J. 2019 Mar 27. Doi: 10.1007/s00192-019-03931-y. [Epub ahead of print] PMID: 30918980
  7. Southworth, E., Hochstedler, B., Price, T.K., Joyce, C., Wolfe, A.J., Mueller, E.R. 2019. A Cross-sectional Pilot Cohort Study Comparing Standard Urine Collection to the Peezy Midstream Device for Research Studies Involving Women. Female Pelvic Med Reconstr Surg. 2019 Mar/Apr;25(2):e28e33doi:10.1097/SPV.0000000000000693.PMID:3080742
  8. Bajic, P., Wolfe, A.J., Gupta, G.N. 2019. Old instillations and new implications for bladder cancer: the urinary microbiome and intravesical BCG. BJU Int. 2019 Jan 21. doi: 10.1111/bju.14683. [Epub ahead of print] PMID: 30663202 
  9. Bajic, P., Wolfe, A.J., Gupta, G.N. 2019. The Urinary Microbiome: Implications in Bladder Cancer Pathogenesis and Therapeutics. 2019 Jan 4. pii: S0090-4295(19)30006-8. doi: 10.1016/ j.urology. 2018.12.034. [Epub ahead of print] PMID:30615894
  10. Wolfe, A.J., Brubaker, L. 2019. Urobiome updates: advances in urinary microbiome research. Nat Rev Urol. 2018 Dec 3. doi: 10.1038/s41585-018-0127-5. [Epub ahead of print] PMID:30510275
  11. Christensen DG, Xie X, Basisty N, Byrnes J, McSweeney S, Schilling B, Wolfe AJ. 2019. Posttranslational Protein Acetylation: An elegant Mechanism for Bacteria to Dynamically Regulate Metabolic Functions. Front Microbiol. 2019 Jul 12;10:1604. doi: 10.3389/fmicb.2019.01604. eCollection 2019. PMC6640162.
  12. Christensen DG, Baumgartner JT, Xie X, Jew KM, Basisty N, Schilling B, Kuhn ML, Wolfe AJ. 2019. Mechanisms, Detection, and Relevance of Protein Acetylation in Prokaryotes. MBio. 2019 Apr 9;10(2). pii: e02708-18. doi: 10.1128/mBio.02708-18. PMC6456759.
  13. Dornbier R, Bajic P, Wolfe AJ, Schwaderer A. 2019. The Role of Bacteria in Non-infection Stone Formation. In The Role of Bacteria in Urology. BH Chew and D Lange (ed) Springer.
  14. Wolff BJ, Price TK, Joyce CJ, Wolfe AJ, Mueller ER. 2019. Oral probiotics and the female urinary microbiome: a double-blinded randomized placebo-controlled trial. Int Urol Nephrol. Dec;51(12):2149-2159. doi: 10.1007/s11255-019-02282-3. Epub 2019 Sep 18. PMID:31535332
  15. Jung CE, Chopyk J, Shin JH, Lukacz ES, Brubaker L, Schwanemann LK, Knight R, Wolfe AJ, Pride DT. 2019. Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome. Sci Rep. 2019 Sep 16;9(1):13409. doi: 10.1038/s41598-019-49823-5. PMID:31527753

2018

  1. Abelson, B., Sun, D., Que, L., Nebel, R.A., Baker, D., Popiel, P., Amundsen, C.L., Chai, T., Close, C., DiSanto, M., Fraser, M.O., Kielb, S.J., Kuchel, G., Mueller, E.R., Palmer, M.H., Parker-Autry, C., Wolfe, A.J., Damaser M.S. 2018. Sex differences in lower urinary tract biology and physiology.  Biol Sex Differ. 2018 Oct 22;9(1):45. doi: 10.1186/s13293-018-0204-8. Review. PMID:30343668
  2. Thomas-White, K.J., Gao, X., Lin, H., Fok, C.S., Ghanayem, K., Mueller, E.R., Dong, Q., Brubaker, L., Wolfe, A.J. 2018.  Urinary microbes and postoperative urinary tract infection risk in urogynecologic surgical patients. Int Urogynecol J. 2018 Dec;29(12):1797-1805. doi: 10.1007/s00192-018-3767-3. Epub 2018 Sep 28.PMID:30267143 
  3. Bajic, P., Van Kuiken, M.E., Burge, B.K., Kirshenbaum, E.J., Joyce, C.J., Wolfe A.J., Branch J.D., Bresler L., Farooq A.V. 2018.  Male Bladder Microbiome Relates to Lower Urinary Tract Symptoms. Eur Urol Focus. 2018 Aug 21. pii: S2405-4569(18)30220-7. doi: 10.1016/j.euf.2018.08.001. [Epub ahead of print] PMID:30143471
  4. Fok, C.S., Gao, X., Lin, H., Thomas-White, K.J., Mueller, E.R., Wolfe, A.J., Dong, Q., Brubaker, L. 2018.  Urinary symptoms are associated with certain urinary microbes in urogynecologic surgical patients. Int Urogynecol J. 2018 Dec;29(12):1765-1771. doi: 10.1007/s00192-018-3732-1. Epub 2018 Aug 16. PMID:30116843  
  5. Garretto, A., Thomas-White, K., Wolfe, A.J., Putonti, C. 2018.  Detecting viral genomes in the female urinary microbiome.  J Gen Virol. 2018 Aug;99(8):1141-1146. doi: 10.1099/jgv.0.001097. Epub 2018 Jun 11. PMID:29889019
  6. Kramer, H., Kuffel, G., Thomas-White, K., Wolfe, A.J., Vellanki, K., Leehey, D.J., Bansal, V.K., Brubaker, L., Flanigan, R., Koval, J., Wadhwa, A., Zilliox. M.J. 2018. Diversity of the midstream urine microbiomein adults with chronic kidney disease. Int Urol Nephrol. 2018 Jun;50(6):1123-1130. doi: 10.1007/s11255-018-1860-7. Epub 2018 Apr 12. PMID: 29651696.
  7. Thomas-White, K., Forster, S.C., Kumar, N., Van Kuiken, M., Putonti, C., Stares, M.D., Hilt, E.E., Price, T.K., Wolfe, A.J., Lawley, TD. 2018. Culturing of female bladder bacteria reveals an interconnected urogenital microbiota. Nat Commun. 2018 Apr 19;9(1):1557. doi: 10.1038/s41467-018-03968-5. PMID:29674608
  8. Miller-Ensminger, T., Garretto A., Brenner, J., Thomas-White, K., Zambom, A., Wolfe, A.J., Putonti, C. 2018. Bacteriophages of the Urinary Microbiome. J Bacteriol. 2018 Mar 12;200(7). pii: e00738-17. doi: 10.1128/JB.00738-17. Print 2018 Apr 1. PMID:29378882  
  9. Price, T.K., Hilt, E.E., Dune, T.J., Mueller, E.R., Wolfe, A.J., Brubaker L. 2018. Urine Trouble: Should we think Differently about UTI? Int Urogyne J. 2018 Feb; 29(2):205-210. doi: 10.1007/s00192-017-3528-8

2017

  1. Mueller, E.R., Wolfe, A.J., Brubaker, L. 2017. The Female Urinary Microbiota.Current Opin Urology. 2017 Feb 23. doi: 101097/MOU.0000000000000396. [Epub ahead of print]. PMID:28234750
  2. Brubaker, L., and Wolfe, A.J. 2017. The Female Urinary Microbiota, Urinary Health and Common Urinary Disorders. Annals of Translational Medicine. 2017 Jan;5(2):34. doi: 10.21037/atm.2016.11.62. PMID:28217699
  3. Brubaker, L., and Wolfe, A.J. The Female Urinary Microbiota/Microbiome: Clinical and Research Implications. Rambam Maimonides Med J. 2017 Apr; 8(2): e0015. Published online 2017 Apr 28. doi: 10.5041/RMMJ.10292 PMCID: PMC5415361
  4. Schwaderer, A.L. and Wolfe, A.J. 2017. The Association Between Bacteria and Urinary Stones.Annals of Translational Medicine. 2017 Jan;5(2):32. doi:. In P 10.21037/atm.2016.11.73. PMID:28217697
  5. Brubaker, L. and Wolfe, A.J. 2017. Microbiota in 2016: Associating Infection and Incontinence with the Female Urinary Microbiota. Nat Rev Urol. 2017 Jan 4. doi: 10.1038/nrurol.2016.262. [Epub ahead of print]. PMID:2805001 
  6. Jacobs, K.M., Thomas-White, K.J., Hilt, E.E., Wolfe, A.J., Waters, T.P. 2017. Microorganisms Identified in the Maternal Bladder: Discovery of the Maternal Bladder Microbiota. AJP Rep. 2017 Jul;7(3):e188-e196. doi: 10.1055/s-0037-1606860. Epub 2017 Sep 29. PMID: 28970961
  7. Dune, T.J., Price, T.K., Hilt, E.E., Thomas-White, K.J., Kliethermes, S., Brincat, C., Brubaker, L., Schreckenberger, P., Wolfe, A.J., Mueller, E.R. 2017. Urinary Symptoms and Their Associations With Urinary Tract Infections in Urogynecologic Patients. Dune TJ, Price TK, Hilt EE, Thomas-White KJ, Kliethermes S, Brincat C, Brubaker L, Schreckenberger P, Wolfe AJ, Mueller ER. Obstet Gynecol. 2017 Oct;130(4):718-725. doi: 10.1097/AOG.0000000000002239. PMID: 28885414
  8. Putonti,, Kalesinskas, L., Cudone, E., Engelbrecht, K.C., Koenig, D.W., Wolfe, A.J. 2017. Draft Genome Sequences of Two ATCC Staphylococcus aureussubsp. aureus Strains. Genome Announc. 2017 Jul 6;5(27). pii: e00618-17. doi: 10.1128/genomeA.00618-17. PMID: 28684583
  9. Dimitrova, D., Engelbrecht, K.C., Putonti,, Koenig, D.W., Wolfe, A.J. 2017. Draft GenomeSequence of Escherichia coli K-12 (ATCC 10798). Genome Announc. 2017 Jul 6;5(27). pii: e00573-17. doi: 10.1128/genomeA.00573-17. PMID:28684574
  10. Engelbrecht, K.C., Putonti,, Koenig, D.W., Wolfe, A.J. 2017. Draft GenomeSequence of Escherichia coli K-12 (ATCC 29425). Genome Announc. 2017 Jul 6;5(27). pii: e00574-17. doi: 10.1128/genomeA.00574-17. PMID:28684575
  11. Putonti,, Kalesinskas, L., Cudone, E., Engelbrecht, K.C., Koenig, D.W., Wolfe, A.J. 2017. Draft GenomeSequence of Enterococcus faecalis ATCC BAA-2128. Genome Announc. 2017 Jul 6;5(27). pii: e00575-17. doi: 10.1128/genomeA.00575-17. PMID:28684576
  12. Putonti,, Cudone, E., Kalesinskas, L., Engelbrecht, K.C., Koenig, D.W., Wolfe, A.J. 2017. Draft GenomeSequence of Micrococcus luteus (Schroeter) Cohn (ATCC 12698). Genome Announc. 2017 Jul 6;5(27). pii: e00576-17. doi: 10.1128/genomeA.00576-PMID:28684577
  13. Putonti C, Kalesinskas L, Cudone E, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequence of Staphylococcus epidermidis (Winslow and Winslow) Evans (ATCC 14990). Genome Announc. 2017;5(27):e00619-17. Published 2017 Jul 6. doi:10.1128/genomeA.00619-17
  14. Putonti C, Kalesinskas L, Cudone E, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequences of Two ATCC Staphylococcus aureus subsp. aureus Strains. Genome Announc. 2017;5(27):e00618-17. Published 2017 Jul 6. doi:10.1128/genomeA.00618-17
  15. Putonti C, Cudone E, Kalesinskas L, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequence of Micrococcus luteus (Schroeter) Cohn (ATCC 12698). Genome Announc. 2017;5(27):e00576-17. Published 2017 Jul 6. doi:10.1128/genomeA.00576-17
  16. Putonti C, Kalesinskas L, Cudone E, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequence of Enterococcus faecalis ATCC BAA-2128. Genome Announc. 2017;5(27):e00575-17. Published 2017 Jul 6. doi:10.1128/genomeA.00575-17

2016

  1. Price, T.K., Shaheen, M., Kalesinskas, L., Malki, K., Hilt, E.E., Putonti, C., Wolfe, A.J. 2016.  Draft Genome Sequence of a Urinary Isolate of Lactobacillus crispatus. Genome Announc. 2016 Dec 1;4(6). pii: e01278-16. doi:10.1128/genomeA.01278-16. PMID:27908986
  2. Hilt, E.E., Price, T.K., Diebel, K., Putonti, C., Wolfe, A.J. 2016.  Draft Genome Sequence for a Urinary Isolate of Nosocomiicoccus ampullae. Genome Announc. 2016 Nov 17;4(6). pii: e01248-16. doi:10.1128/genomeA.01248-16. PMID:27856579
  3. Price, T.K., Mehrtash, A., Kalesinskas, L., Malki, K., Hilt, E.E., Putonti, C., Wolfe, A.J. 2016.  Genome Sequences and Annotation of Two Urinary Isolates of Escherichia coli. Stand Genomic Sci. 2016. 12:11:79. PMID:27777649
  4. Malki, K., Shaprio, J.W., Price, T.K., Hilt, E.E., Thomas-White, K.J., Sircar, T., Rosenfeld, A.B., Kuffel, G., Zilliox, M.J., Wolfe, A.J., Putonti, C. 2016. Genomes of GardnerellaStrains Reveal an Abundance of Prophages within the Bladder Microbiome. PLoS One. 2016 Nov 18; 11(11):e0166757. doi: 10.1371/journal.pone.0166757. PMID: 27861551 
  5. Brubaker, L. and Wolfe, A.J. 2016.  The Urinary Microbiota: A Paradigm Shift for Bladder Disorders? Current Opinions in Obstetrics and Gynecology. 2016 Oct;28(5):407-12. doi: 10.1097/GCO.0000000000000298. PMID:27379439
  6. Thomas-White, K., Kliethermes, S., Rickey, L., Lukacz, E., Richter, H.E., Moalli, P., Zimmern, P., Norton, P., Kusek, J.W., Wolfe, A.J. and Brubaker, L. for the NIDDK Urinary Incontinence Treatment Network. Evaluation of the Urinary Microbiome of Women with Uncomplicated Stress Urinary Incontinence. American Journal of Obstetrics and Gynecology. 2016 Aug 4. pii: S0002-9378(16)30522-1. doi: 10.1016/j.ajog.2016.07.049. [Epub ahead of print]. PMID:27498309 
  7. Losada, L., Amundsen, C.L., Ashton-Miller, J., Chai, T., Close, C., Damaser, M., DiSanto, M., Dmochowski, R., Fraser, M.O., Kielb, S.J., Kuchel, G., Mueller, E.R., Parker-Autry, C., Wolfe, A.J., Mallampalli, M.P. 2016. Expert Panel Recommendations on Lower Urinary Tract Health of Women Across Their Life Span. J Women's Health (Larchmt). 2016 Jun 10. [Epub ahead of print]. PMID:27285829
  8. Thomas-White, K., Brady, M., Wolfe, A.J., Mueller, E.R. 2016.  The Bladder is Not Sterile: History and Current Discoveries on the Urinary Microbiome. Bladder Dysfunct. Rep. 2016 Mar; 11(1):18-24. [Epub 2016 Jan 30]. PMID:27182288 
  9. Price, T.K. and Dune, T., Hilt, E.E., Thomas-White, K.J., Kliethermes, S., Brincat, C., Brubaker, L., Wolfe, A.J., Mueller, E.R., Schreckenberger, P.C. 2016.  The Clinical Urine Culture: Enhanced Techniques Improve Detection of Clinically Relevant Microorganisms. J Clin Microbiol. 2016 May; 54(5) doi:10.1128/JCM.00044-16. [Epub 2016 Mar 9]. PMID:26962083
  10. Barr-Baer, E., Saxena,V., Hilt, E.E., Thomas-White, K., Schober, M., Li, B., Becknell, B., Hains, D.S., Wolfe, A.J., and Schwarderer, A.L. 2016. The Interaction between Enterobacteriaceae and Calcium Oxalate Deposits. PLoS One. 2015 Oct 8;10(10):e0139575. doi:10.1371/journal.pone.0139575. eCollection 2015. PMID:26448465
  11. Malki, K., Sible, E., Cooper, A., Garretto, A., Bruder, K., Watkins, S.C., Putonti, 2016. Seven Bacteriophages Isolated from the Female Urinary Microbiota. GenomeAnnounc. 2016 Nov 23;4(6). pii: e01003-16. doi: 10.1128/genomeA.01003-16. PMID:27881533

2015

  1. Thomas-White, K., Hilt, E.E., Fok, C., Pearce, M.M., Mueller, E.R., Kliethermes, S., Jacobs, K., Zilliox, M.J., Brincat, C., Price, T.K., Kuffel, G., Schreckenberger, P.C., Gai, X. Brubaker, L. and Wolfe, A. J. 2015.  Incontinence Medication Response Relates to the Female Urinary Microbiota. IUJO 2015 Sep 30. [Epub ahead of print]. PMID:26423260
  2. Pearce, M.M., Zilliox, M.J., Thomas-White, K.J., Richter, H.E., Nager, C.W., Visco, A.G., Nygaard, I.E., Barber, M.D., Schaffer, J., Moalli, P., Sung, V.W., Smith, A.L., Rogers, R., Nolen, T.L., Wallace, D., Meikle, S.F., Gai, X., Wolfe, A.J., AND Brubaker, L; Pelvic Floor Disorders Network. 2015. The Female Urinary Microbiota in Urgency Urinary Incontinence.  Am J Obstet Gynecol. Am J Obstet Gynecol. 2015 Sep; 213(3):347. PMID:26210757 
  3. Wolfe, A. J. and Brubaker, L. 2015.  “Sterile Urine” and the Presence of Bacteria. Eur Urol. 2015 Aug;68(2):173-4. PMID: 25774008
  4. Brubaker, L. and Wolfe, A. J. 2015. The New World of the Urinary Microbiome in Women.  American Journal of Obstetrics & Gynecology. 2015 May 21. pii: S0002-9378(15)00508-6. doi: 10.1016/j.ajog.2015.05.032. [Epub ahead of print]. PMID: 26003055  

2014

  1. Nienhouse, V., Gao, X., Dong, Q., Nelson, D.E., Toh, E., McKinley, K., Schreckenberger, P., Shibata, N., Fok, C.S., Kenton, K., Mueller, E.R., Brubaker, L., Wolfe, A.J., and Radek, K.A. 2014. Interplay Between Bladder Microbiota and Urinary Antimicrobial Peptides: Mechanisms for Human Urinary Tract Infection Risk and Symptom Severity.  PLoS One. 2014 Dec 8;9(12):e114185. PMID:25486068
  2. Le, P., Pearce, M.M., Zhang, S., Campbell, E.M., Fok, C.S., Mueller, E.R., Brincat, C.A., Wolfe, A.J. and Brubaker, L. 2014.  IL22 Regulates Human Urothelial Cell Sensory and Innate Functions through Modulation of the Acetylcholine Response, Immunoregulatory Cytokines and Antimicrobial Peptides: Assessment of an in vitro Model. PLoS One. 2014 Oct 29;9(10):e111375. PMID:25354343. 
  3. Pearce, M.M., Hilt, E.E., Rosenfeld, A.B., Zilliox, M.J., Thomas-White, K., Fok, C., Kliethermes, S., Schreckenberger, P., Brubaker, L., Gai, X. and Wolfe, A.J. 2014.  The Female Urinary Microbiome: A Comparison of Women with and without Urgency Urinary Incontinence.  mBio. 2014 Jul 8;5(4). pii: e01283-14. PMID:25006228 
  4. Brubaker, L., Nager, C.W., Richter, H.E., Visco, A., Nygaard, I., Barber, M.D., Schaffer, J., Meikle, S., Wallace, D., Shibata, N., Wolfe, A.J. 2014. Urinary Bacteria in Adult Women with Urgency Urinary Incontinence. Int Urogynecol J. 2014 Feb 11. [Epub ahead of print]. PMID:24515544
  5. Hilt, E.E., McKinley, K., Pearce, M.M., Rosenfeld, A.B., Zilliox, M.J., Mueller, E.R., Brubaker, L., Gai, X., Wolfe, A.J., and Schreckenberger, P.C. 2014.  Urine is Not Sterile: Use of Enhanced Urine Culture Techniques to Detect Resident Bacterial Flora in the Adult Female Bladder.  J Clin Microbiol. 2014 Mar;52(3):871-6. PMID:24371246 

2013

  1. Fok, C.S., McKinley, K., Mueller, E.R., Kenton, K., Schreckenberger, P., Wolfe, A.J., and Brubaker, L. 2013.  Day of Surgery Urine Cultures Identify Urogynecologic Patients at Increased Risk for Post-operative Urinary Tract Infection.  J Urol. 2013. 189(5):1721-4. PMID:23219547

2012

  1. Wolfe, A.J., Toh, E., Shibata, N., Rong, R., Kenton, K., FitzGerald, M., Mueller, E., Schreckenberger, P., Dong, Q., Nelson, D. and Brubaker, L. 2012.  Evidence of Uncultivated Bacteria in the Adult Female Bladder.  J. Clin Microbiology 2012. 50(4):376-83. PMID:22278835  

 

Search Pubmed for a complete listing of Alan Wolfe's publications

Publications – Genomes

2022

  1. Jablonska S, Wolfe AJ, and Putonti C. Draft genome of S. epidermidis UMB7543, isolated from a female with recurrent urinary tract infections. Microbiology Resources Announcements 2022 Nov 10:e0096222. doi: 10.1128/mra.00962-22.

2020

  1. Markovic, T, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Actinomyces neuii UMB1295, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00402-20. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=7272554&tool=pmcentrez&rendertype=abstract.
  2. Crawford, T, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Escherichia coli UMB1353, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00416-20. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=7272557&tool=pmcentrez&rendertype=abstract.
  3. Belmonte, M, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Escherichia coli UMB9246, Isolated from the Bladder of a Woman with Recurrent Urinary Tract Infection. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00437-20. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=7272561&tool=pmcentrez&rendertype=abstract.
  4. Khan, F, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Lactobacillus crispatus UMB1163, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00404-20. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=7272555&tool=pmcentrez&rendertype=abstract.
  5. Truckenbrod, A, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Staphylococcus epidermidis UMB8493, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00419-20. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=7272558&tool=pmcentrez&rendertype=abstract.
  6. Scott, T, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Streptococcus anginosus UMB0839, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00411-20. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=7272556&tool=pmcentrez&rendertype=abstract.
  7. Schwartz, A, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Enterococcus faecalis UMB1309, Isolated from Catheterized Urine. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00406-20. https://www.ncbi.nlm.nih.gov/pubmed/32467279.
  8. Kalski, M, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Enterococcus faecalis UMB7780, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00400-20. https://www.ncbi.nlm.nih.gov/pubmed/32467278.
  9. Eskandar, S, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Corynebacterium aurimucosum UMB7769, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00391-20. https://www.ncbi.nlm.nih.gov/pubmed/32467275.
  10. Tsibere, O, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Lactobacillus mulieris UMB7784, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00403-20. https://www.ncbi.nlm.nih.gov/pubmed/32439675.
  11. Gallian, N, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Proteus mirabilis Strain UMB0038, Isolated from the Female Bladder. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00401-20. https://www.ncbi.nlm.nih.gov/pubmed/32439674.
  12. Miller, S, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Streptococcus anginosus UMB7768, Isolated from a Woman with Recurrent UTI Symptoms. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00418-20. https://www.ncbi.nlm.nih.gov/pubmed/32439677.
  13. Purta, N, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Antibiotic-Resistant Enterococcus faecalis Strain UMB0843, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00407-20. https://www.ncbi.nlm.nih.gov/pubmed/32409554.
  14. Ali Khan, A, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Corynebacterium coyleae UMB8490, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00393-20. https://www.ncbi.nlm.nih.gov/pubmed/32409550.
  15. Bhimalli, P, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Klebsiella pneumoniae UMB7779, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00396-20. https://www.ncbi.nlm.nih.gov/pubmed/32409552.
  16. Gondi, S, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Klebsiella pneumoniae UMB8492, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00405-20. https://www.ncbi.nlm.nih.gov/pubmed/32409553.
  17. Miller-Ensminger, T, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Lactobacillus jensenii Strain UMB7766, Isolated from the Female Bladder. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00392-20. https://www.ncbi.nlm.nih.gov/pubmed/32409549.
  18. West-Pelak, E, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Lactobacillus jensenii UMB0847, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00395-20. https://www.ncbi.nlm.nih.gov/pubmed/32409551.
  19. Allen, O, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Proteus mirabilis UMB1310, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00390-20. https://www.ncbi.nlm.nih.gov/pubmed/32409548.
  20. Ramotowski, L, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Lactobacillus mulieris UMB9245, Isolated from the Female Bladder. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00408-20. https://www.ncbi.nlm.nih.gov/pubmed/32409555.
  21. Kemper, L, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Staphylococcus epidermidis UMB7765, Isolated from the Urobiome of a Woman with Recurrent Urinary Tract Infection. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00417-20. https://www.ncbi.nlm.nih.gov/pubmed/32409557.
  22. Temelkova, S, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Streptococcus anginosus UMB1296, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00409-20. https://www.ncbi.nlm.nih.gov/pubmed/32409556.
  23. Salgado, LM, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Streptococcus agalactiae UMB7782, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00423-20. https://www.ncbi.nlm.nih.gov/pubmed/32409558.
  24. Balce, E, Miller-Ensminger, T, Voukadinova, A, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequence of Klebsiella pneumoniae UMB7783, Isolated from the Female Bladder. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.00394-20. https://www.ncbi.nlm.nih.gov/pubmed/32381623.
  25. Mores, CR, Price, TK, Brassil, B, Putonti, C, Wolfe, AJ. 2020. Complete Genome Sequences of Streptococcus mitis Strains Isolated from the Oral Cavity and Urogenital Tract of a Woman and Her Male Sexual Partner. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.01379-19. https://www.ncbi.nlm.nih.gov/pubmed/31896651.
  26. Johnson, G, Mores, CR, Wolfe, AJ, Putonti, C. 2020. Draft Genome Sequences of Two Pseudomonas aeruginosa Isolates from the Female Urogenital Tract. Microbiology Resource Announcements. 9:. doi: 10.1128/MRA.01378-19. https://www.ncbi.nlm.nih.gov/pubmed/31896650.
  27. Rivera I, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft genome sequence of Lactobacillus jensenii UMB0836, isolated from the female bladder. Microbiol Resour Announc, 2020, 9:e00410-20. (Open Access)

2019

  1. Johnson, G, Stark, N, Wolfe, AJ, Putonti, C. 2019. Complete Genome Sequence of a Pseudomonas aeruginosa Isolate from a Kidney Stone. Microbiology Resource Announcements. 8:. doi: 10.1128/MRA.01073-19. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=6753288&tool=pmcentrez&rendertype=abstract.
  2. Putonti, C, Akhnoukh, V, Anagnostopoulos, Z, Bilek, M, Colgan, J, El Idrissi, S, Magnuszewski, K, Marino, S, Szymulewski, M, Tyahla, M, Yanchuk, V, Miller-Ensminger, T, Batrich, M, Brassil, B, Mormando, R, Johnson, G, Wolfe, AJ. 2019. Draft Genome Sequences of Six Lactobacillus gasseri and Three Lactobacillus paragasseri Strains Isolated from the Female Bladder. Microbiology Resource Announcements. 8:. doi: 10.1128/MRA.00973-19. https://www.ncbi.nlm.nih.gov/pubmed/31515350.
  3. Putonti, C, Ahmad, A, Baddoo, G, Diaz, J, Do, M, Gallian, N, Lorentzen, C, Mohammed, H, Murphy, J, Olu-Ajeigbe, A, Yang, T, Miller-Ensminger, T, Stark, N, Maskeri, L, Van Dusen, J, Wolfe, AJ. 2019. Draft Genome Sequences of 11 Lactobacillus jensenii Strains Isolated from the Female Bladder. Microbiology Resource Announcements. 8:. doi: 10.1128/MRA.00970-19. https://www.ncbi.nlm.nih.gov/pubmed/31467111.
  4. Johnson, G, Putonti, C. 2019. Genome Sequence of Pseudomonas Phage UMP151, Isolated from the Female Bladder Microbiota. Microbiology Resource Announcements. 8:. doi: 10.1128/MRA.00853-19. https://www.ncbi.nlm.nih.gov/pubmed/31416880.

2017

  1. Putonti, C, Cudone, E, Kalesinskas, L, Engelbrecht, KC, Koenig, DW, Wolfe, AJ. 2017. Draft Genome Sequence of Micrococcus luteus (Schroeter) Cohn (ATCC 12698). Genome Announcements (Washington, DC). 5:. doi: 10.1128/genomeA.00576-17. https://www.ncbi.nlm.nih.gov/pubmed/28684577.
  2. Putonti, C, Kalesinskas, L, Cudone, E, Engelbrecht, KC, Koenig, DW, Wolfe, AJ. 2017. Draft Genome Sequence of Staphylococcus epidermidis (Winslow and Winslow) Evans (ATCC 14990). Genome Announcements (Washington, DC). 5:. doi: 10.1128/genomeA.00619-17. https://www.ncbi.nlm.nih.gov/pubmed/28684584.
  3. Putonti, C, Kalesinskas, L, Cudone, E, Engelbrecht, KC, Koenig, DW, Wolfe, AJ. 2017. Draft Genome Sequences of Two ATCC Staphylococcus aureus subsp. aureus Strains. Genome Announcements (Washington, DC). 5:. doi: 10.1128/genomeA.00618-17. https://www.ncbi.nlm.nih.gov/pubmed/28684583.
  4. Engelbrecht, KC, Putonti, C, Koenig, DW, Wolfe, AJ. 2017. Draft Genome Sequence of Escherichia coli K-12 (ATCC 29425). Genome Announcements (Washington, DC). 5:. doi: 10.1128/genomeA.00574-17. https://www.ncbi.nlm.nih.gov/pubmed/28684575.
  5. Dimitrova, D, Engelbrecht, KC, Putonti, C, Koenig, DW, Wolfe, AJ. 2017. Draft Genome Sequence of Escherichia coli K-12 (ATCC 10798). Genome Announcements (Washington, DC). 5:. doi: 10.1128/genomeA.00573-17. https://www.ncbi.nlm.nih.gov/pubmed/28684574.
  6. Putonti, C, Kalesinskas, L, Cudone, E, Engelbrecht, KC, Koenig, DW, Wolfe, AJ. 2017. Draft Genome Sequence of Enterococcus faecalis ATCC BAA-2128. Genome Announcements (Washington, DC). 5:. doi: 10.1128/genomeA.00575-17. https://www.ncbi.nlm.nih.gov/pubmed/28684576.

2016

  1. Price, TK, Shaheen, M, Kalesinskas, L, Malki, K, Hilt, EE, Putonti, C, Wolfe, AJ. 2016. Draft Genome Sequence of a Urinary Isolate of Lactobacillus crispatus. Genome Announcements (Washington, DC). 4:. doi: 10.1128/genomeA.01278-16. https://www.ncbi.nlm.nih.gov/pubmed/27908986.
  2. Malki, K, Sible, E, Cooper, A, Garretto, A, Bruder, K, Watkins, SC, Putonti, C. 2016. Seven Bacteriophages Isolated from the Female Urinary Microbiota. Genome Announcements (Washington, DC). 4:. doi: 10.1128/genomeA.01003-16. https://www.ncbi.nlm.nih.gov/pubmed/27881533.
  3. Hilt, EE, Price, TK, Diebel, K, Putonti, C, Wolfe, AJ. 2016. Draft Genome Sequence for a Urinary Isolate of Nosocomiicoccus ampullae. Genome Announcements (Washington, DC). 4:. doi: 10.1128/genomeA.01248-16. https://www.ncbi.nlm.nih.gov/pubmed/27856579.
  4. Price, TK, Mehrtash, A, Kalesinskas, L, Malki, K, Hilt, EE, Putonti, C, Wolfe, AJ. 2016. Genome sequences and annotation of two urinary isolates of E. coli. Standards in Genomic Sciences. 11:79. doi: 10.1186/s40793-016-0202-6. https://www.ncbi.nlm.nih.gov/pubmed/27777649.

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